PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0650.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 223aa    MW: 24979.7 Da    PI: 5.0759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-16109159255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp+      r++lg+f++  +Aa+ ++ a+ k++g
  SapurV1A.0059s0650.1.p 109 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDSDVDAARSYDCAAFKMRG 159
                             7********.**********8542..4**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-30108168IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21109168IPR016177DNA-binding domain
PROSITE profilePS5103224.065109167IPR001471AP2/ERF domain
SMARTSM003808.8E-36109173IPR001471AP2/ERF domain
PfamPF008478.0E-12109159IPR001471AP2/ERF domain
CDDcd000184.92E-29109167No hitNo description
PRINTSPR003672.0E-12110121IPR001471AP2/ERF domain
PRINTSPR003672.0E-12149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATPEESSTL ELIRQHLLGD FTSTDEFISN LESRIASVSV KLESSLSGSE SNSPISDQSY  60
HSTQEIYSFE IKPEIVDLTP PEPMLSSSSN QYAPPEPVKM TDKGEAVRHY RGVRRRPWGK  120
FAAEIRDPTR KGSRVWLGTF DSDVDAARSY DCAAFKMRGR KAILNFPLEA GLSRPPPATS  180
RKRRRSKREE VQPESVEVST ENWNIKWSGE EEGVSDEEQL SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-27108168161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184RKRRR
2180185RKRRRS
3180187RKRRRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022363.11e-145PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY051e-49EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLB9NBR01e-143B9NBR0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15060.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-41ERF family protein